You can change the pitch of notes after they have been input using the note tools popover.
Procedure
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In Write mode, select the notes you want to transpose.
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Open the note tools popover in any of the following ways:
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Enter the transposition interval you want into the popover.
For example:
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To transpose notes up by a third, enter t3.
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To transpose notes down by a minor sixth, enter t-min6.
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To transpose C♮ upwards by nine quarter tones in 24-EDO, enter t 3 9 qt for E or t 4 9 qt for F.
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Press Return to close the popover.
Result
The selected notes are transposed by the degree specified. Any figured bass shown on the affected staves is also transposed accordingly.